PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_9511_iso_7
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family MYB_related
Protein Properties Length: 647aa    MW: 72351.3 Da    PI: 10.1432
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_9511_iso_7genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73e-091144338
                                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
                      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                                          W++eE  ++++a +++G++ Wk++a+ +  +R+  
  cra_locus_9511_iso_7_len_1968_ver_3 11 QWSKEELTRFYEAYRKYGKD-WKKVASAVR-NRSVD 44
                                         6*****************99.*********.99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.696760IPR017884SANT domain
SMARTSM007172.2E-4856IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-101056IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-51144IPR009057Homeodomain-like
PfamPF002494.2E-81146IPR001005SANT/Myb domain
CDDcd001679.36E-61246No hitNo description
PfamPF065843.4E-8599640IPR033471DIRP domain
SMARTSM011351.2E-4599647IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0016592Cellular Componentmediator complex
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
KRKLSDMLGP QWSKEELTRF YEAYRKYGKD WKKVASAVRN RSVDMVEALY TMNRAYLSLP  60
EGTASVVGLN AMMTDHYSNL AGSDSEQESN DGAGTSRKPQ KRARGRVQPG NSKASDVQIT  120
SPMVPSGYVG LQLMKKKRTG GSGPRAVGKR TPRFPVSYSY ENIKGEKFFS PTRQGLRMKT  180
DTNDDDVAHE IALALTEASQ RGSSPQASQT PILRSESVMS SPARNAELKR AGLKSVNARN  240
VESDVDDEDL EGSMEADTGD LSRHGPFVKP RVGTMVNKGR RIDRRKLDVD DSSDNHLDDI  300
KEACSGTEEG QGLGASRGKL KIDAKISRSS PQGSRKKSKK VLFSRDEAPA FDALQTLADL  360
SLMMPAEGNE DESMVQIKEE NDDHVDESGS LETMPTDNQR DRRKSSGVRV KVDRSSSRLG  420
VALSKAPKPG KVSTVDDKDL SDMKQEVYQS KSVRKKQKIR KSEAHLDSHV SESQEAEARD  480
IGKMSKNKRS QSASPKLIKN AEHSSSTDPR REGSDSTQST VQVPPAKEIS LPTSVRSRRK  540
RNLKKPNIQK DLKFPDKVFN ERSCNPASSL HDTASILKEK LSNCLSNHRL RRWCTYEWFY  600
SAIDYPWFAK REFVEYLYHV GLGHVPRLTR VEWGVIRRYL HVLPEPI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1453459RKKQKIR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071459.10.0PREDICTED: protein ALWAYS EARLY 3
RefseqXP_011071460.10.0PREDICTED: protein ALWAYS EARLY 3
RefseqXP_011071461.10.0PREDICTED: protein ALWAYS EARLY 3
RefseqXP_011071462.10.0PREDICTED: protein ALWAYS EARLY 3
TrEMBLA0A068UX250.0A0A068UX25_COFCA; Uncharacterized protein
STRINGSolyc01g067560.2.10.0(Solanum lycopersicum)